Errata

I'm so sorry but - in this section - are we not comparing each to the synthetic hybrid? In the hybrid the last word is "doge", but it says for 1 "deleted e" (but it's the same as hybrid) and for 2 "added e" - again same as hybrid, and for 3 - it doesn't mention the deleted e. Therefore, I don't think this example lines up perfectly but I get the meaning.
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The quick brown fax jumped over the lazy doge.

The quick _ fox jumped over their lazy doge.

The quick brown fox jumps over the lazy brown dog.

We’d like to inventory their differences in a way that is not biased toward any single one of them, and is robust to the possibility of adding new mutant sentences as we encounter them. So we create a synthetic hybrid that encapsulates what they have most in common, yielding this:

The quick brown fox jumped over the lazy doge.

We can use this as a common reference coordinate system against which we can plot what is different (if not necessarily unique) in each mutant:

Fourth word, o → a substitution; ninth word, deleted e

Third word deleted; seventh word, added ir; ninth word, added e

Fifth word ed → s substitution; duplication of the third word located after the eighth word
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Note from the Author or Editor:
This report is correct, I think I tweaked the example at some point and failed to adapt some of the text. Here is what should change:

Original:

1. Fourth word, o → a substitution; ninth word, deleted e
2. Third word deleted; seventh word, added ir; ninth word, added e
3. Fifth word ed → s substitution; duplication of the third word located after the eighth word

Update:

1. Fourth word, o → a substitution; ninth word ends with e
2. Third word missing; seventh word ends with ir; ninth word ends with e
3. Fifth word, ed → s substitution; duplication of the third word located after the eighth word; ninth word does not end with e

There is an extra "in" in the first line after figure 5-6 (page 142 in the ebook from google).
"Some of the first reads, those shown in in one shade at the top of the pile in Figure 5-6......"

Note from the Author or Editor:
This report is correct, the error is present also in the printed version so I assume it's in all of them. The line should read "Some of the first reads, those shown in one shade at the top of the pile in Figure 5-6......"

double space after the first word "At "

Note from the Author or Editor:
(Fixed in Atlas)

genome-wide association studies (rather than analysis studies). This mistake also appears at the end of the Jupyter notebook.

Note from the Author or Editor:
(Fixed in Atlas and github)