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Bioinformatics with R Cookbook by Paurush Praveen Sinha

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Working with PubMed in R

Research begins with a survey of the related works in the field. This can be achieved by looking into the literature available. PubMed is a service that provides the option to look into the literature. The service has been provided by NCBI-Entrez databases (shown in the following screenshot) and is available at https://www.ncbi.nlm.nih.gov. R provides an interface to look into the various aspects of the literature via PubMed. This section provides a protocol to handle this sort of interface. This recipe allows the searching, storing, and mining, and quantification meta-analysis within the R program itself, without the need to visit the PubMed page every time, thus aiding in analysis automation. The following screenshot ...

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