We have dealt with two different data formats. In this recipe, we will introduce an R package that not only enables us to work with raw data but also helps in quality checks and many analytical steps. In this recipe, we will mainly talk about handling raw data and quality checks with
For this recipe, we will use the
GWASTools package and the included data sets for demonstration purposes. Besides this, we will also use the data package named
Perform the following steps to walk through the use of the
GWASTools package to work with GWAS data:
> source("http://bioconductor.org/biocLite.R") ...