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Bioinformatics with R Cookbook by Paurush Praveen Sinha

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Manipulating other GWAS data formats

Until now, we have worked with structured data frames and PLINK files (.ped and .map). However, there are different formats for data, and using different libraries requires different data formats for analysis. This recipe will talk focus on reading some more data formats and their interconversion to other, usable formats.

Getting ready

As mentioned, we will discuss some more data formats during this recipe. Therefore, we need to have data in different formats. The data comes from experiments on different platforms. In the following demo steps, we provide only the reference names; you can change the names with your own files. Note that without having these, it is not possible to execute the code. However, the ...

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