310 Index
object.size(), 24
objects(), 23
old.packages(), 217
oldClass(), 79, 84
oldClass<-(), 79
on.exit(), 54
OOP, 7
options(), 46, 47
order(), 152
ordered(), 18
package
aaMI, 145
annotate, 145, 265
AnnotationDbi, 243, 244, 248,
250, 252, 253
base, 57, 58, 110, 212, 216, 224,
225
Biobase, 4, 46, 73, 78, 104, 108,
150, 169, 216, 222, 223, 226,
232–234, 245
biocViews, 211, 218
biomaRt, 144, 229, 265–268
Biostrings, 141, 145, 166, 171,
173, 174, 177, 181, 197
BSgenome, 172
codetools, 273, 276, 277
ctv, 211
datasets, 212
DBI, 238, 240
flowCore, 3
genefilter, 234
geneplotter, 159
GeneR, 145
GEOquery, 270
GO.db, 248, 252
graph, 89, 110, 115, 117, 218
graphics, 212, 215
grDevices, 212
grid, 65
hgu95av2, 230
hgu95av2.db, 244, 248
JRI, 210
KEGG, 272
KEGG.db, 252
KEGGSOAP, 272
lattice, 65, 215 ...