Stochastic Modelling for Systems Biology, Third Edition, 3rd Edition

Contents

Author

Acknowledgments

Preface to the third edition

Preface to the second edition

Preface to the first edition

I  Modelling and networks

1    Introduction to biological modelling

1.1    What is modelling?

1.2    Aims of modelling

1.3    Why is stochastic modelling necessary?

1.4    Chemical reactions

1.5    Modelling genetic and biochemical networks

1.6    Modelling higher-level systems

1.7    Exercises

1.8    Further reading

2    Representation of biochemical networks

2.1    Coupled chemical reactions

2.2    Graphical representations

2.3    Petri nets

2.4    Stochastic process algebras

2.5    Systems Biology Markup Language (SBML)

2.6    SBML-shorthand

2.7    Exercises

2.8    Further reading

II  Stochastic processes and simulation