June 2015
Intermediate to advanced
306 pages
6h 50m
English
Content preview from Bioinformatics with Python CookbookBecome an O’Reilly member and get unlimited access to this title plus top books and audiobooks from O’Reilly and nearly 200 top publishers, thousands of courses curated by job role, 150+ live events each month,
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Retrieving gene ontology information from Ensembl
In this recipe, we will introduce the usage of gene ontology information again by querying the Ensembl REST API. Gene ontologies are controlled vocabularies to annotate gene and gene products. These are made available as trees of concepts (with more general concepts near the top of the hierarchy). There are three domains for gene ontologies: cellular component, molecular function, and biological process.
Getting ready
As with the previous recipe, we do not require any predownloaded data, but as we are using web APIs, Internet access will be needed. The amount of data transferred will be limited.
As usual, you can find this content on the 02_Genomes/Gene_Ontology.ipynb notebook.
We will make use of ...
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O’Reilly covers everything we've got, with content to help us build a world-class technology community, upgrade the capabilities and competencies of our teams, and improve overall team performance as well as their engagement.Julian F.
I wanted to learn C and C++, but it didn't click for me until I picked up an O'Reilly book. When I went on the O’Reilly platform, I was astonished to find all the books there, plus live events and sandboxes so you could play around with the technology.Addison B.
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I'm always learning. So when I got on to O'Reilly, I was like a kid in a candy store. There are playlists. There are answers. There's on-demand training. It's worth its weight in gold, in terms of what it allows me to do.