Data Algorithms

Index

Symbols

• + (addition operator), Addition over a Set of Integers
• + (concatenation operator), Concatenation over Lists
• - (subtraction operator), Subtraction over a Set of Integers
• [] (square brackets), Concatenation over Lists

A

• absolute risk, Cox Regression
• addition operator (+), Addition over a Set of Integers
• adenine, DNA Base Count
• adjacency lists, Input
• alignByBWA() function, Mapper for the alignment phase
• alleles, definition of term, Allele and Allelic Frequency
• allelic frequency
  • basic terminology, Allelic Frequency-Fisher’s Exact Test
  • chromosomes X and Y, Special Handling of Chromosomes X and Y
  • data sources, Source of Data for Allelic Frequency
  • definition of term, Allelic Frequency, Allele and Allelic Frequency
  • determining monoids, Is Our Bottom 100 List a Monoid?
  • formal problem statement, Formal Problem Statement
  • MapReduce solution
    • p-values sample plot, Sample Plot of P-Values
    • phase 1, MapReduce Solution, Phase 1-Sample Run of Phase 1 MapReduce/Hadoop Implementation
    • phase 2, MapReduce Solution, Phase 2
    • phase 3, MapReduce Solution, Phase 3-Hadoop Implementation Classes for Bottom 100 List for Each Chromosome
    • sample run, Sample Run of Phase 1 MapReduce/Hadoop Implementation
• Amazon, Content-Based Recommendation: Movies
  • (see also content-based recommendations)
• Apache
  • Common Math, T-Test Algorithm
  • Commons Math3 , Pearson Correlation Wrapper Class
  • Mahout, Apache Mahout
• array data structure, Solution 2: Using an Array
• ArrayListOfLongsWritable class, Solution 2: Hadoop Implementation Using ArrayListOfLongsWritable ...