Data-Intensive Science

CHAPTER 3

Large-Scale Microscopy Imaging Analytics for In Silico Biomedicine

Joel Saltz, Fusheng Wang, George Teodoro, Lee Cooper, Patrick Widener, Jun Kong, David Gutman, Tony Pan, Sharath Cholleti, Ashish Sharma, Daniel Brat, and Tahsin Kurc

CONTENTS

3.1    Introduction

3.2    Application of Microscopy Imaging in In Silico Biomedical Research

3.3    Data and Computation Challenges in Microscopy Imaging Analytics

3.4    Data-Intensive and High-Performance Computing Approaches for Large-Scale Microscopy Imaging Analytics

3.4.1    Processing Large Volumes of Image Data

3.4.2    Representing Image Data and Analysis Results

3.4.3    Metadata and Spatial Queries on Analysis Results

3.5    Discussion and Conclusions

Acknowledgments

References