IBM Reference Architecture for High Performance Data and AI in Healthcare and Life Sciences

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Use cases

This chapter describes use cases and contains the following topics:

•The Broad Institute Genome Analysis Toolkit (GATK)

•Expanding IBM Reference Architecture for High-Performance Data Analytics into medical imaging

5.1 The Broad Institute Genome Analysis Toolkit (GATK)

The Broad Institute GATK is a set of applications that is used to create multi-step workflows for variant discovery analysis of both germline and somatic genomes. Each step has its own set of tools. The output from each step is the input to the next step. There are a variety ...

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