Chapter 7Local Nucleic Acid Analysis of Adherent Cells

Aditya Kashyap, Deborah Huber, Julien Autebert and Govind V. Kaigala

IBM Research – Zurich, Säumerstrasse 4, 8803 Rüschlikon, Switzerland

7.1 Introduction

7.1.1 Heterogeneity in Cells and Their Microenvironments

Most physiological processes are consequences of cells interacting with their microenvironment to perform healthy tissue-level functions [1–4]. This microenvironment can be the surrounding extracellular matrix or different cell types constituting a tissue. Interactions within the microenvironment predominantly comprise direct physical contact [4–6], migration [7], and multimodal signal transduction [8]. Understanding and elaborating the causes and effects of such interactions ...

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