July 2018
Beginner to intermediate
406 pages
9h 55m
English
Blurring your image may seem odd, but it often serves to reduce noise, which helps with further processing. With mahotas, it is just a function call:
im16 = mh.gaussian_filter(image, 16)
Notice that we did not convert the grayscale image to unsigned integers; we just made use of the floating point result as is. The second argument to the gaussian_filter function is the size of the filter (the standard deviation of the filter). Larger values result in more blurring, as shown in the following screenshot:

We can use the preceding screenshot and the threshold with Otsu (using the previous code). Now, the boundaries are smoother, ...
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