Elegant SciPy

Index

Symbols

• %matplotlib inline, Between Samples
• 3-Clause BSD licenses, Open source licenses
• @ (matrix multiplication operator), Contingency Tables Using Sparse Coordinate Matrices

A

• acknowledgments, Acknowledgments
• adjacency matrices, Laplacian Matrix of a Graph
• arguments, keyword-only, Between Genes
• attributions, Using Code Examples

B

• basin-hopping, Avoiding Local Minima with Basin Hopping
• Berkeley Segmentation Dataset and Benchmark, Using Variation of Information
• biclustering, Biclustering the Counts Data
• big data, Exercise: Online Unzip
  • (see also streaming data analysis)
• Big O notation, Choosing the Length of the DFT
• Bluestein algorithm, Choosing the Length of the DFT
• broadcasting, Broadcasting, Broadcasting rules, Exercise: Reducing the Memory Footprint

C

• Cancer Genome Atlas (TCGA) , Elegant NumPy: The Foundation of Scientific Python, Exploring a Gene Expression Dataset
• central dogma of molecular biology, Introduction to the Data: What Is Gene Expression?
• code examples, obtaining and using, Open source licenses, Accessing the Book Materials, Using Code Examples, GitHub
• colorbrewer palette, Laplacians with Brain Data
• comments and questions, How to Contact Us, Contributing to This Book
• conda, Installing Python
• conditional entropy, Information Theory in Brief
• confusion matrices, Contingency Tables
  • (see also contingency tables)
• connected components, Graphs and the NetworkX library
• constrained optimization, Function Optimization in SciPy
• contact information, How to Contact Us, Contributing to This Book
• contingency ...