Algorithms in Computational Molecular Biology: Techniques, Approaches and Applications

INDEX

aa-tRNA

ABI-SOLiD next-generation sequencing system

ABS database

Abscisic acid (ABA)

Absorption, in drug discovery

Absorption, distribution, metabolism, elimination, toxicology (ADMET)

ACANA

AC automaton

Activator, regulatory networks

Active learning methods

Acyclic graphs

Adenine (A)

ADGO

ADHORE

Adjacencies, generally

genomic distances

matrix

relation

Adleman-Lipton problem

Affine gap penalty

Aho-Corasick, generally

algorithm

automata

Akaike information criterion (AIC)

ALEXSYS

Alignment

algorithms, it see Alignment algorithms

arc-annotated sequences

clustering sequence

full sensitivity

genome-wide

mapping sequences

motifs combined with

multiple

of sequences

shapes

types of

Alignment algorithms

accuracy of

influential factors

types of

Alignment fragment pairs (AFPs)

Alignment-free distance

Alignment-free techniques

biological applications

combinatorial

compositional methods

exact word matches

experimental algorithmics, datasets and software for

information-theoretic

statistical dependency

Alleles

ALLEZ

Alphabet(s)

bounded

Alphabet E

DNA

Alternating cycle

Alternative splicing

Alternative splicing factor/splicing factor2 (ASF/SF2)

Alternative Splicing Graph Server (ASGS)

Ambiguity cluster

Amdahl’s law

Amino acids

Amortization

Amphibians, phylogenetic trees

Amplification

Amplifiers

Amplify operation, Adleman-Lipton model

Amplitude

Analysis of variance (ANOVA)

Ancestral genome reconstruction

Anchor/anchoring

ballast

pairwise alignment algorithms

Annealing. See also Simulated ...