Stochastic Modelling for Systems Biology, Third Edition, 3rd Edition

APPENDIX A

SBML Models

This appendix contains a few examples of complete SBML documents describing models discussed in the text. All of these models, and many others, can be down-loaded from this book’s website.

A.1 Auto-regulatory network

The model below is the SBML for the auto-regulatory network discussed in Chapter 2 and Chapter 7.

<?xml version="1.0" encoding="UTF-8"?>

<sbml xmlns="http://www.sbml.org/sbml/level3/version1/core" level="3" version="1

    ">

   <model id="AutoRegulatoryNetwork" name="Auto-regulatory_⊔network"

     substanceUnits="item" timeUnits="second" volumeUnits="litre" extentUnits=

     "item">

    <listOfCompartments>

     <compartment id="Cell"/>

    </listOfCompartments>

    <listOfSpecies>

     <species id="Gene" ...