Python for Bioinformatics

Index

A

affine gap, 114

akando, 37

alignment, 2, 12, 333, 337

dynamic programming, 101

gapped alignments, 179

multiple sequence alignment, 157

numerical sequence alignment, 345

sequence alignment, 89

anchor, 51

and (logical), 367

antipersistent, 353

append, 5, 9, 11, 37

arange, 21, 27

argsort, 21, 39, 203, 256

array

function, 13

numerical, 8, 13, 16

arrow matrix, 102–113

ASN.1, 71, 84

assembly, 157, 160, 171, 179, 249

astype, 19

atof, 7

atoi, 7

average, 53

axis, 24, 259

B

backtrace, 105, 111–114, 182–184, 192

big endian, 26, 366

binary, 5, 25, 85, 323

binary tree, 198, 199

biopython, 12, 87, 287

BLOSUM matrix, 93, 94, 102, 178, 195

BlosumScore, 95, 96

BMU, 275, 314

box plots, 405, 407, 408

brain, 389

byteswap, 26, 366

C

C++, 1, 3–7, 10

candlesticks ...