November 2017
Intermediate to advanced
472 pages
11h 21m
English
book
Basic Applied Bioinformatics
by Chandra Sekhar Mukhopadhyay, Ratan Kumar Choudhary, Mir Asif Iquebal
Content preview from Basic Applied Bioinformatics
Become an O’Reilly member and get unlimited access to this title plus top books and audiobooks from O’Reilly and nearly 200 top publishers, thousands of courses curated by job role, 150+ live events each month,
O’Reilly covers everything we've got, with content to help us build a world-class technology community, upgrade the capabilities and competencies of our teams, and improve overall team performance as well as their engagement.I wanted to learn C and C++, but it didn't click for me until I picked up an O'Reilly book. When I went on the O’Reilly platform, I was astonished to find all the books there, plus live events and sandboxes so you could play around with the technology.I’ve been on the O’Reilly platform for more than eight years. I use a couple of learning platforms, but I'm on O'Reilly more than anybody else. When you're there, you start learning. I'm never disappointed.I'm always learning. So when I got on to O'Reilly, I was like a kid in a candy store. There are playlists. There are answers. There's on-demand training. It's worth its weight in gold, in terms of what it allows me to do.
Appendix C: NCBI Database: A Brief Account
CS Mukhopadhyay and RK Choudhary
School of Animal Biotechnology, GADVASU, Ludhiana
The information on each of the databases listed below has been collected from NCBI. In several cases, the description of the databases will be verbatim to that available in the NCBI pages. The information regarding these databases has been taken from NCBI‐guide (https://www.ncbi.nlm.nih.gov/guide/) and related sites.
| SN | Databases | Features |
| 1 | Assembly | This database maintains and periodically updates organism‐wise information on assembled genomes (WGS) or complete chromosome sequence of prokaryotic and eukaryotic organisms. |
| 2 | Bio project | This database holds data and information related to a single project or a consortium. It enables users to obtain voluminous data belonging to a project, in one place. The type of records maintained in Bioprojects are Genome sequencing and assembly; Metagenomes; Genetic or RH maps; Targeted locus sequencing; Epigenetics; Phenotype or Genotype and Variation detection, Transcriptome sequencing and expression. |
| 3 | Biosystems | A data repository of information (list, sequence, structure) regarding biological molecules (genes, proteins, small molecules) and pathways involved in biological systems. This includes data from BioCyc (including its Tier 1 EcoCyc and MetaCyc databases and its tier 2 databases), KEGG, Reactome, the National Cancer Institute’s Pathway Interaction Database, WikiPathways and Gene Ontology (GO). |
| 4 | Bookshelf | A database of ... |
Become an O’Reilly member and get unlimited access to this title plus top books and audiobooks from O’Reilly and nearly 200 top publishers, thousands of courses curated by job role, 150+ live events each month,
and much more.
Read now
Unlock full access
More than 5,000 organizations count on O’Reilly
O’Reilly covers everything we've got, with content to help us build a world-class technology community, upgrade the capabilities and competencies of our teams, and improve overall team performance as well as their engagement.Julian F.
I wanted to learn C and C++, but it didn't click for me until I picked up an O'Reilly book. When I went on the O’Reilly platform, I was astonished to find all the books there, plus live events and sandboxes so you could play around with the technology.Addison B.
I’ve been on the O’Reilly platform for more than eight years. I use a couple of learning platforms, but I'm on O'Reilly more than anybody else. When you're there, you start learning. I'm never disappointed.Amir M.
I'm always learning. So when I got on to O'Reilly, I was like a kid in a candy store. There are playlists. There are answers. There's on-demand training. It's worth its weight in gold, in terms of what it allows me to do.