Here, we will compare aligned sequences. We will perform gene and genome-wide comparisons.
We will use DendroPy and will require results from the previous two recipes. As usual, this information is available in the corresponding notebook at
Take a look at the following steps:
RESTV) and the Sudan virus (
from __future__ import print_function import os from collections import OrderedDict import dendropy from dendropy import popgenstat genes_species = OrderedDict() my_species = ['RESTV', ...