Bioinformatics with Python Cookbook

Conventions

In this book, you will find a number of text styles that distinguish between different kinds of information. Here are some examples of these styles and an explanation of their meaning.

Code words in text, filenames, file extensions, URLs, user input, are shown as follows: "If you are using notebooks, open the 00_Intro/Interfacing_R notebook.ipynb and just execute the wget command on top."

A block of code is set as follows:

from collections import OrderedDict
import simuPOP as sp
pop_size = 100
pops = sp.Population(pop_size, loci=[1] * num_loci)
num_loci = 10
init_ops['Freq'] = sp.InitGenotype(freq=[0.5, 0.5])

Any command-line input or output is written as follows:

conda create -n bioinformatics biopython=1.65 python=3.4

New terms and ...