June 2015
Intermediate to advanced
306 pages
6h 50m
English
Content preview from Bioinformatics with Python CookbookBecome an O’Reilly member and get unlimited access to this title plus top books and audiobooks from O’Reilly and nearly 200 top publishers, thousands of courses curated by job role, 150+ live events each month,
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Chapter 8. Other Topics in Bioinformatics
In this chapter, we will cover the following recipes:
- Accessing the Global Biodiversity Information Facility via REST
- Georeferencing GBIF datasets
- Accessing molecular interaction databases with PSIQUIC
- Plotting protein interactions with Cytoscape the hard way
Introduction
In this chapter, we will address some topics that are well within the remit of computational biology and deserve at least some reference. We will start with two recipes using the Global Biodiversity Information Facility (GBIF), a database of worldwide scientific data on biodiversity. After this, we will interface Python with Cytoscape, a powerful software platform to visualize genomic and proteomic interaction networks. To perform visualization ...
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I'm always learning. So when I got on to O'Reilly, I was like a kid in a candy store. There are playlists. There are answers. There's on-demand training. It's worth its weight in gold, in terms of what it allows me to do.