June 2015
Intermediate to advanced
306 pages
6h 50m
English
Content preview from Bioinformatics with Python CookbookBecome an O’Reilly member and get unlimited access to this title plus top books and audiobooks from O’Reilly and nearly 200 top publishers, thousands of courses curated by job role, 150+ live events each month,
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Accessing molecular-interaction databases with PSIQUIC
PSIQUIC (http://www.ebi.ac.uk/Tools/webservices/psicquic/view/main.xhtml) is a consistent interface to many molecular-interaction databases. It's used inside Cytoscape, which is the object of the next recipe. We take this as an opportunity to learn how to interact with PSIQUIC. In this recipe, we will use its REST interface to check the databases that are available and perform some basic querying. We will revisit this in the Cytoscape recipe. You can find this content in the 07_Other/PSICQUIC.ipynb notebook.
How to do it...
Take a look at the following steps:
- First, let's define a convenient REST function as follows:
from __future__ import print_function import requests def get_psiquic(service, ...
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