Here, we will find atoms closer to three zincs on the
1TUP model. We will consider several distances to these zincs. We will take this opportunity to discuss the performance of algorithms.
You can find this content in the
06_Prot/Distance.ipynb notebook. Take a look at the Bio.PDB recipe.
Take a look at the following steps:
from __future__ import print_function from Bio import PDB repository = PDB.PDBList() parser = PDB.PDBParser() repository.retrieve_pdb_file('1TUP', pdir='.') p53_1tup = parser.get_structure('P 53', 'pdb1tup.ent')
zns =  for atom in p53_1tup.get_atoms(): if ...