November 2018
Intermediate to advanced
360 pages
9h 36m
English
Content preview from Bioinformatics with Python Cookbook - Second Edition
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Analyzing data in VCF
After running a genotype caller (for example, GATK or SAMtools), you will have a VCF file reporting on genomic variations, such as SNPs, insertions/deletions (INDELs), copy number variations (CNVs), and so on. In this recipe, we will discuss VCF processing with the PyVCF module.