November 2018
Intermediate to advanced
360 pages
9h 36m
English
Content preview from Bioinformatics with Python Cookbook - Second Edition
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Getting ready
If you did not go through the previous recipe, please read its There's more... section. The code was tested in a local server, as prepared in the preceding recipe, but it might require some adaptations if you run it against a public server.
Our code will need to authenticate itself against the Galaxy server in order to perform the necessary operations. Because security is an important issue, this recipe will not be totally naive with regards to it. Our script will be configured via a YAML file, for example:
rest_protocol: httpserver: localhostrest_port: 8080ftp_port: 8021user: admin@galaxy.orgpassword: adminapi_key: admin
Our script will not accept this file as plaintext, but it will require it to be encrypted. That being said, ...