BLAST

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Alignments

|

95

P-value for a single database hit. Groups are labeled and need not be inferred. Notice

that some groups contain only one alignment.

Figure 6-6. Alignment groups (groups can be inferred from Expect values)

Figure 6-7. WU-BLAST alignment groups with topcomboN=9

a

b

c

d

Score = 58.2 bits (139), Expect = 1e-10

Score = 52.4 bits (124), Expect(2) = 5e-14

Score = 52.4 bits (124), Expect(2) = 9e-18

Score = 49.3 bits (116), Expect(2) = 9e-18

Score = 47.8 bits (112), Expect(2) = 3e-13

Score = 46.6 bits (109), Expect = 3e-07

Score = 38.9 bits (89), Expect = 7e-05

Score = 38.9 bits (89), Expect = 7e-05

Score = 38.5 bits (88), Expect(2) = 3e-13

Score = 37.0 bits (84), Expect = 3e-04

Score = 36.6 bits (83), Expect(2) = 5e-14

Score = 34.7 bits (78), Expect = 0.001

Score = 32.0 bits (71), Expect(2) = 1e-04

Score = 26.6 bits (57), Expect = 0.34

Score = 24.6 bits (52), Expect(2) = 1e-04

Plus

Score = 130 (50.8 bits), Expect = 6.5e-14, Sum P(2) = 6.5e-14, Group = 1

Score = 128 (50.1 bits), Expect = 6.5e-14, Sum P(2) = 6.5e-14, Group = 1

Score = 130 (50.8 bits), Expect = 1.3e-09, Sum P(3) = 1.3e-09, Group = 2

Score = 86 (35.3 bits), Expect = 1.3e-09, Sum P(3) = 1.3e-09, Group = 2

Score = 61 (26.5 bits), Expect = 1.3e-09, Sum P(3) = 1.3e-09, Group = 2

Score = 120 (47.3 bits), Expect = 5.6e-09, Sum P(2) = ...