
504 Statistics and Data Analysis for Microarrays Using R and Bioconductor
Gene C5 C3 T3 C1 T5 T2 C2 T1 T4 C4 t
g 1 0 .340 0.232 0.760 0.610 0.224 0.238 0.075 0.624 0.978 0.19 8 t
11
g 2
0.155 0.724 0.163 0.100 0.143 0.257 0.833 0.06 2 0.578 0.796 t
12
g 3
0.659 0.273 0.003 0.202 0.332 0.752 0.010 0.58 5 0.694 0.201 t
13
g 4
0.034 0.918 0.749 0.748 0.643 0.807 0.760 0.52 0 0.930 0.638 t
14
g 5
0.887 0.532 0.091 0.254 0.487 0.380 0.075 0.93 6 0.730 0.362 t
15
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New p-values are calculated using the chosen gene level test (e.g. t-test) for
this per mutation and the values are corrected for multiple experiments using
Holm’s step-down ...