Skip to Content
The R Book
book

The R Book

by Michael J. Crawley
June 2007
Beginner to intermediate
950 pages
27h 8m
English
Wiley
Content preview from The R Book

Kaplan–Meier Survival Distributions

This is a discrete stepped survivorship curve that adds information as each death occurs. Suppose we had n = 5 individuals and that the times at death were 12, 17, 29, 35 and 42 weeks after the beginning of a trial. Survivorship is 1 at the outset, and stays at 1 until time 12, when it steps down to 4/5 = 0.8. It stays level until time 17, when it drops to 0.8 × 3/4 = 0.6. Then there is a long level period until time 29, when survivorship drops to 0.6 × 2/3 = 0.4, then drops at time 35 to 0.4 × 1/2 = 0.2, and finally to zero at time 42.

images

The solid line shows the survival distribution and the dotted lines show the confidence intervals (see below). In general, therefore, we have two groups at any one time: the number of deaths d(ti) and the number at risk r(ti) (i.e. those that have not yet died: the survivors). The Kaplan–Meier survivor function is

images

which, as we have seen, produces a step at every time at which one or more deaths occurs. Censored individuals that survive beyond the end of the study are shown by a + on the plot or after their age in a dataframe (thus 65 means died at time 65, but 65+ means still alive when last seen at age 65).

Become an O’Reilly member and get unlimited access to this title plus top books and audiobooks from O’Reilly and nearly 200 top publishers, thousands of courses curated by job role, 150+ live events each month,
and much more.

Read now

Unlock full access

More than 5,000 organizations count on O’Reilly

AirBnbBlueOriginElectronic ArtsHomeDepotNasdaqRakutenTata Consultancy Services

QuotationMarkO’Reilly covers everything we've got, with content to help us build a world-class technology community, upgrade the capabilities and competencies of our teams, and improve overall team performance as well as their engagement.
Julian F.
Head of Cybersecurity
QuotationMarkI wanted to learn C and C++, but it didn't click for me until I picked up an O'Reilly book. When I went on the O’Reilly platform, I was astonished to find all the books there, plus live events and sandboxes so you could play around with the technology.
Addison B.
Field Engineer
QuotationMarkI’ve been on the O’Reilly platform for more than eight years. I use a couple of learning platforms, but I'm on O'Reilly more than anybody else. When you're there, you start learning. I'm never disappointed.
Amir M.
Data Platform Tech Lead
QuotationMarkI'm always learning. So when I got on to O'Reilly, I was like a kid in a candy store. There are playlists. There are answers. There's on-demand training. It's worth its weight in gold, in terms of what it allows me to do.
Mark W.
Embedded Software Engineer

You might also like

The R Book, 2nd Edition

The R Book, 2nd Edition

Michael J. Crawley
The R Book, 3rd Edition

The R Book, 3rd Edition

Elinor Jones, Simon Harden, Michael J. Crawley
R Data Analysis Cookbook, Second Edition - Second Edition

R Data Analysis Cookbook, Second Edition - Second Edition

Kuntal Ganguly, Davor Lozić, Mzabalazo Z. Ngwenya, Andrew Bauman, Shanthi Viswanathan, Viswa Viswanathan

Publisher Resources

ISBN: 9780470510247Purchase book