May 2019
Intermediate to advanced
452 pages
12h 16m
English
Content preview from Hands-On GPU Computing with Python
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Bioinformatics workflow management
The following research paper is discussed in this section: Managing Complex Workflows in Bioinformatics: An Interactive Toolkit With GPU Acceleration, A Welivita, I Perera, D Meedeniya, A Wickramarachchi, V Mallawaarachchi (2018), IEEE Transactions on NanoBioscience, 17(3), 199-208, doi:10.1109/tnb.2018.2837122.
BioWorkflow is a GPU-accelerated workflow management system based on the Amazon cloud. The application uses three levels of parallelism:
- Parallel execution inside workflow nodes
- Parallel execution among workflow nodes
- Concurrent execution of different instances of the workflow with different user inputs
The Amazon cloud-enabled GPU-accelerated computing allowed achieving the preceding three levels ...
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