April 2022
Beginner to intermediate
486 pages
10h 22m
Chinese
Content preview from 云端基因组学
Become an O’Reilly member and get unlimited access to this title plus top books and audiobooks from O’Reilly and nearly 200 top publishers, thousands of courses curated by job role, 150+ live events each month,
O’Reilly covers everything we've got, with content to help us build a world-class technology community, upgrade the capabilities and competencies of our teams, and improve overall team performance as well as their engagement.I wanted to learn C and C++, but it didn't click for me until I picked up an O'Reilly book. When I went on the O’Reilly platform, I was astonished to find all the books there, plus live events and sandboxes so you could play around with the technology.I’ve been on the O’Reilly platform for more than eight years. I use a couple of learning platforms, but I'm on O'Reilly more than anybody else. When you're there, you start learning. I'm never disappointed.I'm always learning. So when I got on to O'Reilly, I was like a kid in a candy store. There are playlists. There are answers. There's on-demand training. It's worth its weight in gold, in terms of what it allows me to do.
前言
｜
7
─ 读取、编写和解释分析工作流，首先使用沙盒环境，接着通过几种执行模式
扩展分析方法（从独立的命令行软件包扩展到管理完善的系统）。
─
在工作区环境管理数据，管理工作流的执行。
─
用
Jupyter Notebooks
软件，以交互式方式分析基因组数据。
─
综合运用以上工具和方法：利用云数据存储技术、合成数据生成技术、可移
植工作流和容器工具，复现出版物所讲计算过程。
•
次要目标：
─
更加熟悉可扩展和最优化方法等计算概念。
─
实际操作一些生物信息学命令行工具包、常用命令和文件格式，积累实战经
验。
本书练习题要求读者具备哪些计算机知识？
第
4
～
10
章的练习题，我们假定你已多少熟悉命令行工具的基础知识，其中包括在
Bash shell
应用程序切换目录、操作文本文件；编写并运行简单命令；熟悉环境变量、
路径和工作目录这些概念。第
8
～
11
章 、第
13
章，我们假定你熟悉脚本编写相关概念，
尽管我们不要求你具有实际编写经验。第
12
、
14
章，我们假定你对
R
和
Python
语
言有所了解，尽管这并非必须，但你要是多少熟悉其句法，就会发现更复杂的例子
也不难理解。
做练习题的过程，你要是感到某些计算工具和术语超出自己的能力和理解范围，我
们建议你参考
Software Carpentry
机构提供的在线课程（
https://software-carpentry.
org
）。它们是专为那些在计算方面没有接受过正式训练的科研人员而设计。倘若你
没有任何命令行工具使用经验，你就会发现其
UNIX shell
课程尤其有帮助（ ...
Become an O’Reilly member and get unlimited access to this title plus top books and audiobooks from O’Reilly and nearly 200 top publishers, thousands of courses curated by job role, 150+ live events each month,
and much more.
Read now
Unlock full access
More than 5,000 organizations count on O’Reilly
O’Reilly covers everything we've got, with content to help us build a world-class technology community, upgrade the capabilities and competencies of our teams, and improve overall team performance as well as their engagement.Julian F.
I wanted to learn C and C++, but it didn't click for me until I picked up an O'Reilly book. When I went on the O’Reilly platform, I was astonished to find all the books there, plus live events and sandboxes so you could play around with the technology.Addison B.
I’ve been on the O’Reilly platform for more than eight years. I use a couple of learning platforms, but I'm on O'Reilly more than anybody else. When you're there, you start learning. I'm never disappointed.Amir M.
I'm always learning. So when I got on to O'Reilly, I was like a kid in a candy store. There are playlists. There are answers. There's on-demand training. It's worth its weight in gold, in terms of what it allows me to do.