April 2022
Beginner to intermediate
486 pages
10h 22m
Chinese
Content preview from 云端基因组学
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342
｜
第
11
章
配置为在示例数据上运行。你需要做的只是克隆工作区。接下来，你就可以按本章
所学内容运行工作流。（第
13
章将介绍如何引入其他源的数据。）
11.3.1
寻找和克隆
GATK
种系短变异发现最佳实践工作区
在本章前面，你已浏览过“
Terra Library
”展示页（
https://oreil.ly/nUMy2
），寻找
我们为本书而创建的教程工作区。让我们再回到那里，但这次你将寻找
GATK
团队
所发布的一个面向实际工作的最佳实践工作区。写作本书时，种系短变异特色工作
区叫作“
Whole-Genome-Analysis-Pipeline
”（
https://oreil.ly/x4Pzc
），如 图
11-36
所示。
后来这个名称可能有所调整，因为该团队计划调整这些资源的命名和打包方式，以
跟上这些工具的适用范围的扩展。你若无法找到该工作区，请点击
GATK
网站的“
Best
Practices
”（最佳实践）板块，上面列有包括
Terra
工作区在内的一组相关资源。此
外，你一定要查看本书博客，我们会时不时地发布更新。
图
11
-
36
：全基因组分析流水线工作区概述（
https://oreil.ly/x4Pzc
）
找到该工作区后，按本章之前介绍的方法克隆它。你将注意到，消息板提供该工作
流的大量信息、示例数据和这些资源的高效利用方法。它甚至还总结在示例数据表
的不同样本上运行该工作流所需时间和费用。说到这，我们一起看看上面都有什么吧。
11.3.2
检查预加载数据
进入克隆工作区，通过导航来到“
Data
”（数据）板块 ...
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I wanted to learn C and C++, but it didn't click for me until I picked up an O'Reilly book. When I went on the O’Reilly platform, I was astonished to find all the books there, plus live events and sandboxes so you could play around with the technology.Addison B.
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I'm always learning. So when I got on to O'Reilly, I was like a kid in a candy store. There are playlists. There are answers. There's on-demand training. It's worth its weight in gold, in terms of what it allows me to do.