April 2022
Beginner to intermediate
486 pages
10h 22m
Chinese
Content preview from 云端基因组学
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292
｜
第
10
章
10.2
直接发送
Cromwell
作业到
PAPI
第
8
章我们运行
Cromwell
时并未提供配置文件，因此它默认将所有作业交机器的
本地执行器。现在我们提供配置文件，要求
Cromwell
将作业交
PAPI
执行。
一个很有趣的事实：不论你在自己的笔记本电脑、本地服务器甚或其他云平台的
虚拟机上运行
Cromwell
，你都可以通过配置让它用
PAPI
运行作业。这里我们向
你展示如何在你的
GCP
平台虚拟机配置
Cromwell
，前提是你已搭好环境（已安装
Cromwell
，并通过
GCP
平台身份认证），但即使你用其他机器，其基本步骤和要求
也应相同。
10.2.1
配置
Cromwell
，实现与
PAPI
通信
Cromwell
文档有一节专门讲它在
GCP
平台上的用法（
https://oreil.ly/MnckS
），并
提供它与
PAPI
通信的配置文件模板，为方便你使用，我们复制一份放到本书的配
套代码。你若按第
4
章说明搭建环境，可以在
~/book/code/config/google.conf
中找
到它。你用文本编辑器打开
google.conf
，就会看到如下内容：
$ cat ~/book/code/config/google.conf
# This is an example configuration file that directs Cromwell to execute
# workflow tasks via the Google Pipelines API backend and allows it to ...
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O’Reilly covers everything we've got, with content to help us build a world-class technology community, upgrade the capabilities and competencies of our teams, and improve overall team performance as well as their engagement.Julian F.
I wanted to learn C and C++, but it didn't click for me until I picked up an O'Reilly book. When I went on the O’Reilly platform, I was astonished to find all the books there, plus live events and sandboxes so you could play around with the technology.Addison B.
I’ve been on the O’Reilly platform for more than eight years. I use a couple of learning platforms, but I'm on O'Reilly more than anybody else. When you're there, you start learning. I'm never disappointed.Amir M.
I'm always learning. So when I got on to O'Reilly, I was like a kid in a candy store. There are playlists. There are answers. There's on-demand training. It's worth its weight in gold, in terms of what it allows me to do.