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云端基因组学
book

云端基因组学

by Geraldine A. Van der Auwera, Brian D. O’Connor
April 2022
Beginner to intermediate
486 pages
10h 22m
Chinese
China Electric Power Press Ltd.
Content preview from 云端基因组学
Terra
平台自己组装工作区
403
因此你需在“
Inputs
”页指定适当文件路径和参数值。你可在原工作区查找每个输
入值,并手动键入,但还有一种更便捷方法。你能猜到怎么做吗?没错,让
Jason
完成所有工作。呃,当然我们说的是
JSON
输入文件(是的,这是个冷笑话,但它
要是能帮你记住你可以上传一个
JSON
输入文件的话,你嘲笑我们讲笑话的水平太
低也无所谓)。
因为第
10
章我们直接通过
Cromwell
运行同一工作流,当时我们用
JSON
文件指定
在本书桶中的所有必要输入。你只需检索该文件的本地副本,接着用“
Inputs
”页
(“
Search Inputs
”框右侧)的“
Drag or click to upload json
”(拖放或点击上传
json
)选项,添加它所包含的输入定义到你的配置。这应该会填充该页所有字段。
确认页面上不再有任何黄色叹号并点击“
Save
”按钮。
至此,你的工作流应该完全配置好,可以运行了。请点击“
Run analysis
”(运行分析)
按钮测试,并按之前你在第
11
章的做法,监控其执行情况。
上面你成功利用博德方法库,导入一个
WDL
工作流到
Terra
平台,并使用直接文件
路径配置选项,配置它在单个样本上运行。这个成就可不小,因为这意味着只要有
测试数据和
JSON
文件示例,你能找到的任何
WDL
工作流,都可以在
Terra
平台测试。
然而,成功测试工作流之后,你想立刻在多个样本上运行,那会发生什么呢?如第
11
章所讲,数据表就派上用场了。那章你只复现第一个练习,这个练习表明你可以 ...
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Publisher Resources

ISBN: 9787519864422