April 2022
Beginner to intermediate
486 pages
10h 22m
Chinese
Content preview from 云端基因组学
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378
｜
第
12
章
In [32] IGV_Explore.load_track(
{
"name": "Workspace bucket copy of Mother WGS",
"url": WS_BUCKET + "/sandbox/mother.bam",
"indexURL": WS_BUCKET + "/sandbox/mother.bai",
"format": "bam",
"oauthToken": token
})
如上所示，我们复制之前使用的代码，加载
BAM
文件，只不过这次我们提供文件
在工作区桶的路径并增加刚生成的令牌。如好奇不提供令牌会发生什么，尽管删除
那行（以及上一行末的逗号）试试看。请注意，我们还可以访问不在
Terra
平台管
理范围的私有桶数据。如第
13
章要讲的，这要求给予你的代理组服务账号（
proxy
group service account
）访问那个桶的权限。
你要在
IGV
浏览器加载多个私有文件，需在每个轨道的定义中提供令牌。
IGV
浏览
器的文档（
https://oreil.ly/RWDqg
）表示可设置一个
IGV
浏览器全局配置变量
igv.
setGoogleOauth
令牌（
accessToken
），它将应用于所有轨道。但写作本书时，该
方法在我们笔记本还不起作用。
12.4
运行
GATK
命令，学习、测试或解决问题
我们可以在笔记本内可视化测序数据，这当然很棒。但我们已可以在桌面版 ...
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I wanted to learn C and C++, but it didn't click for me until I picked up an O'Reilly book. When I went on the O’Reilly platform, I was astonished to find all the books there, plus live events and sandboxes so you could play around with the technology.Addison B.
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I'm always learning. So when I got on to O'Reilly, I was like a kid in a candy store. There are playlists. There are answers. There's on-demand training. It's worth its weight in gold, in terms of what it allows me to do.