April 2022
Beginner to intermediate
486 pages
10h 22m
Chinese
Content preview from 云端基因组学
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351
第
12
章
Jupyter Notebooks
中的
交互式分析
本章，我们将结束在云端的这段工作经历。我们从第
4
章在
shell
中运行单条命令开
始，开启云端工作，并通过第
5
～
7
章的学习，熟练掌握
GATK
工具。接着，在第
8
章我们研究几个已写好的工作流，并在后续章节陆续发现运行工作流的更佳方式。
然而我们现在回头看看这个不可逃避的事实：并非基因组的一切工作都能（或应该）
通过编写工作流的方式来完成。有时你只想直接与数据交互，如生成一组图表，并
根据图表形状确定下一步工作。也许你正处于项目的早期探究阶段，但不幸卡壳，
你得研究几个失败的样本以解决问题，或继续挖掘一群人的相关遗传问题。不管是
哪种情况，你都需要能够快速验证想法，跟踪每种尝试的产出，并与他人分享你的
工作。
本章将介绍如何在
Terra
平台用
Jupyter Notebooks
实现这些目标。我们将首先简要
介绍
Jupyter
，以便于你熟悉其概念和工具。我们会多花点时间介绍其在
Terra
平台
的用法，重点讲解其更偏向
Terra
平台和云环境的功能和操作。在本章动手练习部分，
我们带你学习一个笔记本示例文件，阐释三种交互分析方法，期间我们将紧扣前几
章的主题和练习。
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O’Reilly covers everything we've got, with content to help us build a world-class technology community, upgrade the capabilities and competencies of our teams, and improve overall team performance as well as their engagement.Julian F.
I wanted to learn C and C++, but it didn't click for me until I picked up an O'Reilly book. When I went on the O’Reilly platform, I was astonished to find all the books there, plus live events and sandboxes so you could play around with the technology.Addison B.
I’ve been on the O’Reilly platform for more than eight years. I use a couple of learning platforms, but I'm on O'Reilly more than anybody else. When you're there, you start learning. I'm never disappointed.Amir M.
I'm always learning. So when I got on to O'Reilly, I was like a kid in a candy store. There are playlists. There are answers. There's on-demand training. It's worth its weight in gold, in terms of what it allows me to do.